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Next Generation Sequencing Consulting
Our Next Generation Sequencing team includes a number of experienced bioinformaticians and programmers, including consultants with PhDs in algorithm design, bioinformatics, computer science, mathematics, and biology.
We are presently focusing on the 454, Illumina Genome Analyzer, SOLiD, and Helicos technologies.
Our main focus areas are
- De novo assemblies of genes as well as small and large genomes
- Read mapping of genes as well as small and large genomes
- ChIP sequencing
- Large scale SNP detection and variant reporting
- Sequence based molecular diagnostics
- Digital gene expression
- Metagenomics
- Clustering and assembly of EST and cDNA sequences
We provide improved scientific results, reduced work complexity, dramatically improved speed of research work, as well as reduced risk of manual and systematic errors by delivering the following services:
Design and development of new algorithms
- Examples are algorithms for de novo assembly of short sequence reads in challenging datasets, and algorithms for assemblies taking advanced genomic rearrangements into account.
Design and development of High Performance Computing solutions solving computational bottlenecks
- Examples are HPC-accelerated sequence assembly and HPC-accelerated downstream analyses like HMMER or Smith Waterman searches.
Design and development of software improving the efficiency of your workflow
- This could be software where all relevant work-tasks a included in one single platform, and where all repetitive work-tasks are automated through batch-run commands.
Analysis of Next Generation Sequencing data
- For customers who wish to get the maximum knowledge out of their experiments in the shortest possible time frame without starting their own bioinformatics department.
Click here if you would like to get in touch with one of our consultants.
